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Ahmad Sakor, Samaneh Jozashoori, Emetis Niazmand, Ariam Rivas, Konstantinos Bougiatiotis, Fotis Aisopos, Enrique Iglesias, Philipp D. Rohde, Trupti Padiya, Anastasia Krithara, Georgios Paliouras, Maria-Esther Vidal, Knowledge4COVID-19: A semantic-based approach for constructing a COVID-19 related knowledge graph from various sources and analyzing treatments' toxicities, In Journal of Web Semantics, Elsevier BV, volume 75, (Pages: 100760), 2023. [url] [doi]

A.Nentidis, A. Krithara, G. Paliouras, E. Farre-Maduell, S. Lima-Lopez and M. Krallinger, BioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge, Chapter in Lecture Notes in Computer Science, Springer Nature Switzerland, (Pages: 577–584), 2023. [url] [doi]

Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras, Luis Gasco, Martin Krallinger, BioASQ at CLEF2022: The tenth edition of the large-scale biomedical semantic indexing andquestion answering challenge, In Accepted at the ECIR 2022: 44th European Conference on Information Retrieval, 10-14 April, Stavanger, Norway, 2022. [url] [doi]

Konstantakos V., Nentidis A., Krithara A., Paliouras G., CRISPR-Cas9 gRNA efficiency prediction: an overview of predictive tools and the role of deep learning, In Nucleic Acids Research, Oxford University Press (OUP), volume 50, (Pages: 3616–3637), 2022. [pdf] [doi]

Konstantakos V., Nentidis A., Krithara A., Paliouras G., CRISPRedict: a CRISPR-Cas9 web tool for interpretable efficiency predictions, In Nucleic Acids Research, Oxford University Press (OUP), 2022. [pdf] [doi]

Eleni Koutsoni, Vasileios Konstantakos, Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras, Modeling the off-target effects of CRISPR-Cas9 experiments for the treatment of Duchenne Muscular Dystrophy, In Proceedings of the 12th Hellenic Conference on Artificial Intelligence, ACM, 2022. [url] [doi]

Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Georgios Paliouras, Overview of BioASQ Tasks 10a, 10b and Synergy10 in CLEF2022, In 10th BioASQ workshop @CLEF2022 , 5-8 September 2022, Bologna, Italy, 2022. [pdf]

Antonio Miranda-Escalada, Luis Gascó, Salvador Lima-López, Eulàlia Farré-Maduell, Darryl Estrada, Anastasios Nentidis, Anastasia Krithara, Georgios Katsimpras, Georgios Paliouras, Martin Krallinger, Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources, In 10th BioASQ workshop @CLEF2022 , 5-8 September 2022, Bologna, Italy, 2022. [pdf]

Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Antonio Miranda-Escalada, Luis Gasco, Martin Krallinger, Georgios Paliouras, Overview of BioASQ 2022: The Tenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering, In CLEF 2022, Experimental IR Meets Multilinguality, Multimodality, and Interaction. Lecture Notes in Computer Science, Springer International Publishing, (Pages: 337–361), 2022. [pdf] [doi]

Anastasia Krithara, Anastasios Nentidis, Georgios Paliouras, Martin Krallinger, Antonio Miranda, BioASQ at CLEF2021: Large-Scale Biomedical Semantic Indexing and Question Answering, In Lecture Notes in Computer Science, Springer Cham, volume 12657, (Pages: 624–630), 2021. [url] [doi]

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