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Nentidis A., Katsimpras G., Krithara A., Paliouras G., Overview of BioASQ Tasks 11b and Synergy11 in CLEF2023, In Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2023), Thessaloniki, Greece, September 18th to 21st, 2023 (Aliannejadi M., Faggioli G. Ferro N., Vlachos M., ed.), CEUR-WS.org, volume 3497, (Pages: 19–26), 2023. [pdf]

Krithara A., Mork J. G., Nentidis A., Paliouras G., The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey, In Frontiers in Research Metrics and Analytics, Frontiers Media SA, volume 8, 2023. [url] [doi]

Nentidis A., Katsimpras G., Krithara A., Lima - López S., Farré-Maduell E., Gasco L., Krallinger M., Paliouras G., Overview of BioASQ 2023: The Eleventh BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering, In Experimental IR Meets Multilinguality, Multimodality, and Interaction - 14th International Conference of the CLEF Association, CLEF 2023, Thessaloniki, Greece, September 18-21, 2023, Proceedings (Arampatzis A., Kanoulas E., Tsikrika T., Vrochidis S., Giachanou A., Li D., Aliannejadi M., Vlachos M., Faggioli G., Ferro N., ed.), Springer, volume 14163, (Pages: 227–250), 2023. [pdf] [doi]

Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras, Luis Gasco, Martin Krallinger, BioASQ at CLEF2022: The tenth edition of the large-scale biomedical semantic indexing andquestion answering challenge, In Accepted at the ECIR 2022: 44th European Conference on Information Retrieval, 10-14 April, Stavanger, Norway, 2022. [url] [doi]

Konstantakos V., Nentidis A., Krithara A., Paliouras G., CRISPR-Cas9 gRNA efficiency prediction: an overview of predictive tools and the role of deep learning, In Nucleic Acids Research, Oxford University Press (OUP), volume 50, (Pages: 3616–3637), 2022. [pdf] [doi]

Konstantakos V., Nentidis A., Krithara A., Paliouras G., CRISPRedict: a CRISPR-Cas9 web tool for interpretable efficiency predictions, In Nucleic Acids Research, Oxford University Press (OUP), 2022. [pdf] [doi]

Eleni Koutsoni, Vasileios Konstantakos, Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras, Modeling the off-target effects of CRISPR-Cas9 experiments for the treatment of Duchenne Muscular Dystrophy, In Proceedings of the 12th Hellenic Conference on Artificial Intelligence, ACM, 2022. [url] [doi]

Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Georgios Paliouras, Overview of BioASQ Tasks 10a, 10b and Synergy10 in CLEF2022, In 10th BioASQ workshop @CLEF2022 , 5-8 September 2022, Bologna, Italy, 2022. [pdf]

Antonio Miranda-Escalada, Luis Gascó, Salvador Lima-López, Eulàlia Farré-Maduell, Darryl Estrada, Anastasios Nentidis, Anastasia Krithara, Georgios Katsimpras, Georgios Paliouras, Martin Krallinger, Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources, In 10th BioASQ workshop @CLEF2022 , 5-8 September 2022, Bologna, Italy, 2022. [pdf]

Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Antonio Miranda-Escalada, Luis Gasco, Martin Krallinger, Georgios Paliouras, Overview of BioASQ 2022: The Tenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering, In CLEF 2022, Experimental IR Meets Multilinguality, Multimodality, and Interaction. Lecture Notes in Computer Science, Springer International Publishing, (Pages: 337–361), 2022. [pdf] [doi]

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