Romanos Fasoulis, Georgios Paliouras, Lydia E. Kavraki, Graph representation learning for structural proteomics, In Emerging Topics in Life Sciences, 2021. [pdf] [doi]
Konstantinos Bougiatiotis, Romanos Fasoulis, Fotis Aisopos, Anastasios Nentidis, Georgios Paliouras, Guiding Graph Embeddings using Path-Ranking Methods for Error Detection in noisy Knowledge Graphs, In Workshop on Graphs and more Complex structures for Learning and Reasoning (GCLR) in AAAI 2021, 9 February, 2021. [url]
Fasoulis R., Paliouras G. and Kavraki L. E., RankMHC: Learning to Rank Class-I Peptide-MHC Structural Models, In Journal of Chemical Information and Modeling, American Chemical Society (ACS), volume 64, (Pages: 8729–8742), 2024. [pdf] [doi]
Fasoulis R., Rigo Menegatti M., Antunes Dinler A., Paliouras G. and Kavraki L. E., Transfer learning improves pMHC kinetic stability and immunogenicity predictions, In ImmunoInformatics, Elsevier BV, volume 13, (Pages: 100030), 2024. [pdf] [doi]